I am a graduating (June 2022) Computer Science Ph.D student at the University of Chicago, advised by Fred Chong studying quantum computer architectures. Currently, I am interested in a wide array of topics including quantum compilation, logic synthesis, and architectural design for near-term and fault tolerant quantum computers among others.

I will be seeking a faculty position in 2021-2022. Feel free to contact me.

Prior to the University of Chicago, I received a B.S. in Mathematics and Chemistry and a B.S. in Computer Science both at the University of Notre Dame, where I worked with Graham Lappin and Peter Kogge.

*All Research Publications*

*All Research Publications*

*Emerging Technologies for Quantum Computing***Jonathan M. Baker,**Frederic T. Chong. IEEE Micro 2021.[To Appear] Generalized Toffoli Decompositions with Variable Number of Ancilla

**Jonathan M. Baker**, Casey Duckering, Alexander Hoover, Frederic T. Chong. ISMVL 2022[To Appear] Communication Trade Offs In Intermediate Qudit Circuits

Andrew Litteken***, Jonathan M. Baker*,**Frederic T. Chong. ISMVL 2022[To Appear] Synthesizing Efficient Pulses for Practical Qudit Circuits

**Jonathan M. Baker,**Jason Chadwick, Lennart Maximilian Seifert, Andrew Litteken, Natalia Nottingham, Anders Petersson, Stefanie Guenther and Frederic T. Chong. QIP Poster 2022*Exploiting Long Distance Interactions and Tolerating Atom Loss in Neutral Atom Quantum Architectures***Jonathan M. Baker,**Andrew Litteken, Casey Duckering, Hank Hoffman, Hannes Bernien, Frederic T. Chong. ISCA 2021.*Virtual Logical Qubits: A Compact Architecture for Fault-Tolerant Quantum Computing***Jonathan M. Baker,**Casey Duckering, David I. Schuster, Frederic T. Chong.**IEEE Micro Top Picks**from the Computer Architecture Conferences*Error Mitigation in Quantum Computers Through Instruction Scheduling*Kate Smith, Gokul Ravi, Prakash Murali,**Jonathan M. Baker**, Nathan Earnest, Ali Javadi-Abhari, Frederic T. Chong. arXiv:2105.01760. May, 2021*Adapting Quantum Approximation Optimization Algorithm (QAOA) for Unit Commitment*

Samathan Koretsky, Pranav Gokhale,**Jonathan M. Baker**, Joshua Viszlai, Honghan Zheng, Niroj Gurung, Ryan Berg, Esa Aleksi Paaso, Amin Khodaei, Rozhin Eskandarpour, Frederic T. Chong. IEEE QCE. Oct 2021,*Orchestrated Trios:**Compiling for Efficient Communication in Quantum Programs with Three-Qubit Gates*Casey Duckering,**Jonathan M. Baker**, Andrew Litteken, Frederic T. Chong. ASPLOS 2021, April 2021*TILT: Achieving Higher Fidelity on a Trapped-Ion**Linear-Tape Quantum Computing Architecture*

Xin-Chuan Wu, Dripto M. Debroy, Yongshan Ding,**Jonathan M. Baker**, Yuri Alexeev, Kenneth R. Brown, Frederic T. Chong. HPCA '21*Virtualized Logical Qubits: A 2.5D Architecture for Error-Corrected Quantum Computing*(**Best Paper Award Runner U****p, IEEE Top Pick)**

Casey Duckering*,**Jonathan M. Baker***, David I. Schuster, Frederic T. Chong. MICRO '20 , October 2020*Memory-Equipped Quantum Architectures**:**The Power of Random Access***Jonathan M. Baker,**David I. Schuster, Frederic T. Chong. PACT'20, October 2020.*I**mproved Quantum Circuits via Intermediate Qutrits***Jonathan M. Baker**, Casey Duckering, Pranav Gokhale, Natalie C. Brown, Kenneth R. Brown, Frederic T. Chong. ACM Transactions on Quantum Computing.*Time-Sliced Quantum Circuit Partitioning for Modular Architectures*.**Jonathan M. Baker**, Casey Duckering, Alex Hoover, Frederic T. Chong, CF'20, May 2020 https://arxiv.org/abs/2005.12259*Efficient Quantum Circuit Decompositions via Intermediate Qudits*.**Jonathan M. Baker***, Casey Duckering*, Frederic T. Chong, ISMVL'20. May 2020. https://arxiv.org/abs/2002.10592*Extending the Frontier of Quantum Computers with Qutrits*.

Pranav Gokhale,**Jonathan M. Baker**, Casey Duckering, Natalie C. Brown , Kenneth R. Brown , Frederic T. Chong. IEEE Micro Top Picks from the Computer Architecture Conferences. May 2020.*Resource-Efficient Quantum Computing by Breaking Abstractions.*

Yunong Shi, Pranav Gokhale, Prakash Murali,**Jonathan M. Baker****,**Casey Duckering, Yongshan Ding, Christopher Chamberland, Andrew W. Cross, David I. Schuster, Kenneth R. Brown, Margaret R. Martonosi, Diana Franklin, Frederic T. Chong. Proceedings of the IEEE. May 2020. (IEEE Xplore)*Asymptotic Improvements to Quantum Circuits via Qutrits*.**(IEEE****Top Pick)**

Pranav Gokhale,**Jonathan M. Baker**, Casey Duckering, Natalie C. Brown, Kenneth R. Brown, Frederic T. Chong. ISCA in Phoenix, AZ. Jun 2019.*Decomposing Quantum Generalized Toffoli with an Arbitrary Number of Ancilla*.**Jonathan M. Baker**, Casey Duckering, Alexander Hoover, Frederic T. Chong

https://arxiv.org/abs/1904.01671, 2019*Noise-Adaptive Compiler Mappings for Noisy Intermediate-Scale Quantum Computers*.

Prakash Murali,**Jonathan M. Baker**, Ali Javadi-Abhari, Frederic T. Chong, Margaret R. Martonosi, Architectural Support for Programming Languages and Operating Systems ASPLOS’19, 2019.*Improved Quantum Circuits via Qutrits***(Best Poster Award)**.

Pranav Gokhale, Casey Duckering, J**onathan M. Baker**, Frederic T. Chong, QIP Poster, 2018.*Improved Quantum Circuits with Qudits and Dirty Ancilla**e**.*

Pranav Gokhale,**Jonathan M. Baker**, Casey Duckering, Frederic T. Chong, MICRO’18 Student Poster Competition, 2018.*Receptor Tyrosine Kinase MET Interactome and Neurodevelopmental Disorder Partners**at the Developing Synapse.*

Zhihui Xie, Jing Li,**Jonathan M. Baker**, Kathie L. Eagleson, Marcelo P. Coba, and Pat Levitt, Biological Psychiatry, 2016

* Indicates equal authorship

*Teaching Experience*

*Teaching Experience*

Instructor

CS229 / CS329 - S21 (Quantum Computer Systems), University of Chicago

Currently developing resources for an EdX version of this course

Teaching Assistant

CS 30151-F17, University of Notre Dame

CS 30151-S18, University of Notre Dame

CS 40175-F17, University of Notre Dame

CS 40175-S17, University of Notre Dame

BIOS 10161-F16, University of Notre Dame

High School Educator

Visual Basic I/II - Spring 2016, Nolan Catholic High School

*Service*

*Service*

External Review Committee, MICRO 2021

Referee, APS

Reviewer, npj Quantum Information journal

Reviewer, IEEE Internet Computing

*Talks & Presentations*

*Talks & Presentations*

*Exploiting Long Distance Interactions and Tolerating Atom Loss in Neutral Atom Quantum Architecture*ISCA 2021 Virtual Conference Talk, June 2021*Efficient Quantum Circuit Decompositions via Intermediate Qudits*

ISMVL 2020 Virtual Conference Talk, November 2020*Memory-Equipped Quantum Architectures**:**The Power of Random Access*

PACT 2020 Virtual Conference Talk, October 2020*Time-Sliced Quantum Circuit Partitioning for Modular Architectures*.

Computing Frontiers 2020 Conference Talk, May 2020*Quantum Computing: The Why and How*Argonne Training Program on Extreme Scale Computing, July 2019

Youtube*Multivalued and Mixed Radix Quantum Computing*Oak Ridge National Lab, Quantum Computing Users Forum, April 2020*Slides**Efficient Quantum Circuit Decompositions via Intermediate Qudits*Fermilab Quantum Seminar, April 2020

Abstract + Slides*Introduction to Multivalued Quantum Computation*

ASPLOS 2020 Tutorial, Lausanne Switzerland

(Postponed due to COVID-19)